Parallax

Parallax

The evolutionary geometry of protein dynamics.

Evolution interacts with the environment by moving protein residues around and selecting the top performing variants. This process has been repeated for every protein in every species that has ever evolved, leaving a large amount of ‘structural jitter’ scattered across even the most static protein family trees. Under selective pressure, the jitter concentrates on functional sites. With the advent of cheap protein structure prediction, biologists can now map, organize, and exploit this evolutionary geometry.

A reference protein structure in blue, overlaid with the translucent structures of thousands of its orthologs. Four regions where they deviate are colored red, green, purple, and yellow, one per mode.
Adenylate kinase, first mode. The lid opens and closes the same way across more than ten thousand species. Blue is conserved in place across evolution. Red moves.

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